J3_7OLD_047

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCACC*GGGCCG

Length

27 nucleotides

Bulged bases

7OLD|1|2|G|1196, 7OLD|1|2|G|1198, 7OLD|1|2|A|1200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OLD_047 not in the Motif Atlas

Geometric match to J3_6CZR_062

Geometric discrepancy: 0.2183

The information below is about J3_6CZR_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59791.1

Basepair signature

cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

7OLD|1|2|C|1177
7OLD|1|2|U|1178
7OLD|1|2|U|1179
7OLD|1|2|A|1180
7OLD|1|2|A|1181
7OLD|1|2|U|1182
7OLD|1|2|U|1183
7OLD|1|2|U|1184
*
7OLD|1|2|G|1195
7OLD|1|2|G|1196
7OLD|1|2|G|1197
7OLD|1|2|G|1198
7OLD|1|2|A|1199
7OLD|1|2|A|1200
7OLD|1|2|A|1201
7OLD|1|2|C|1202
7OLD|1|2|U|1203
7OLD|1|2|C|1204
7OLD|1|2|A|1205
7OLD|1|2|C|1206
7OLD|1|2|C|1207
*
7OLD|1|2|G|1449
7OLD|1|2|G|1450
7OLD|1|2|G|1451
7OLD|1|2|C|1452
7OLD|1|2|C|1453
7OLD|1|2|G|1454

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

HABP4_PAI-RBP1 domain-containing protein

Chain SP

40S ribosomal protein s15-like protein

Chain SS

Putative ribosomal protein

Chain SU

40S ribosomal protein S20-like protein

Chain Sd

Ribosomal protein uS14

Chain Sf

40S ribosomal protein S27a-like protein