J3_7OOD_001

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

7OOD|1|3|U|74, 7OOD|1|3|A|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_001 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.1797

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

7OOD|1|3|A|58
7OOD|1|3|C|59
*
7OOD|1|3|G|72
7OOD|1|3|A|73
7OOD|1|3|U|74
7OOD|1|3|A|75
7OOD|1|3|A|76
7OOD|1|3|G|77
7OOD|1|3|C|78
*
7OOD|1|3|G|111
7OOD|1|3|A|112
7OOD|1|3|U|113
7OOD|1|3|U|114
7OOD|1|3|U|115

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain s

50S ribosomal protein L23

Chain w

50S ribosomal protein L29