J3_7OOD_006

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_006 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.1715

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7OOD|1|3|C|1326
7OOD|1|3|G|1327
7OOD|1|3|A|1328
7OOD|1|3|U|1329
7OOD|1|3|U|1330
7OOD|1|3|G|1331
*
7OOD|1|3|C|1659
7OOD|1|3|A|1660
7OOD|1|3|A|1661
*
7OOD|1|3|U|1673
7OOD|1|3|A|1674
7OOD|1|3|A|1675
7OOD|1|3|G|1676

Current chains

Chain 3

23S ribosomal RNA

Nearby chains