J3_7OOD_013

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUUU*AAAGUAAG*CGAGG

Length

18 nucleotides

Bulged bases

7OOD|1|3|A|2813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OOD|1|3|C|2797
7OOD|1|3|A|2798
7OOD|1|3|U|2799
7OOD|1|3|U|2800
7OOD|1|3|U|2801
*
7OOD|1|3|A|2808
7OOD|1|3|A|2809
7OOD|1|3|A|2810
7OOD|1|3|G|2811
7OOD|1|3|U|2812
7OOD|1|3|A|2813
7OOD|1|3|A|2814
7OOD|1|3|G|2815
*
7OOD|1|3|C|2893
7OOD|1|3|G|2894
7OOD|1|3|A|2895
7OOD|1|3|G|2896
7OOD|1|3|G|2897

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain r

50S ribosomal protein L22