J3_7OOD_015

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCAUGU*AGC*GAAAG

Length

15 nucleotides

Bulged bases

7OOD|1|4|A|11, 7OOD|1|4|U|12, 7OOD|1|4|A|98

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_015 not in the Motif Atlas

Homologous match to J3_5J7L_049

Geometric discrepancy: 0.2761

The information below is about J3_5J7L_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89095.1

Basepair signature

cWW-F-F-F-tHS-F-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

7OOD|1|4|C|8
7OOD|1|4|C|9
7OOD|1|4|C|10
7OOD|1|4|A|11
7OOD|1|4|U|12
7OOD|1|4|G|13
7OOD|1|4|U|14
*
7OOD|1|4|A|66
7OOD|1|4|G|67
7OOD|1|4|C|68
*
7OOD|1|4|G|96
7OOD|1|4|A|97
7OOD|1|4|A|98
7OOD|1|4|A|99
7OOD|1|4|G|100

Current chains

Chain 4

5S ribosomal RNA

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA

Chain n

50S ribosomal protein L18

Chain u

50S ribosomal protein L27