J3_7OOD_018
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGAAG*CGCGCAAAAG*CGUAU
- Length
- 20 nucleotides
- Bulged bases
- 7OOD|1|3|A|355, 7OOD|1|3|A|357
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OOD_018 not in the Motif Atlas
- Homologous match to J3_5J7L_068
- Geometric discrepancy: 0.1418
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OOD|1|3|A|331
7OOD|1|3|G|332
7OOD|1|3|A|333
7OOD|1|3|A|334
7OOD|1|3|G|335
*
7OOD|1|3|C|350
7OOD|1|3|G|351
7OOD|1|3|C|352
7OOD|1|3|G|353
7OOD|1|3|C|354
7OOD|1|3|A|355
7OOD|1|3|A|356
7OOD|1|3|A|357
7OOD|1|3|A|358
7OOD|1|3|G|359
*
7OOD|1|3|C|371
7OOD|1|3|G|372
7OOD|1|3|U|373
7OOD|1|3|A|374
7OOD|1|3|U|375
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L4
- Chain t
- 50S ribosomal protein L24
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