J3_7OOD_021

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUCAG*UGUAGAGU*GUGUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OOD|1|3|U|2303
7OOD|1|3|U|2304
7OOD|1|3|C|2305
7OOD|1|3|A|2306
7OOD|1|3|G|2307
*
7OOD|1|3|U|2325
7OOD|1|3|G|2326
7OOD|1|3|U|2327
7OOD|1|3|A|2328
7OOD|1|3|G|2329
7OOD|1|3|A|2330
7OOD|1|3|G|2331
7OOD|1|3|U|2332
*
7OOD|1|3|G|2339
7OOD|1|3|U|2340
7OOD|1|3|G|2341
7OOD|1|3|U|2342
7OOD|1|3|A|2343
7OOD|1|3|A|2344
7OOD|1|3|G|2345

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain d

50S ribosomal protein L5

Chain n

50S ribosomal protein L18

Chain u

50S ribosomal protein L27