J3_7OOD_023

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGACA*UC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_023 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2081

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7OOD|1|3|U|1453
7OOD|1|3|G|1454
7OOD|1|3|A|1455
7OOD|1|3|C|1456
7OOD|1|3|A|1457
*
7OOD|1|3|U|1598
7OOD|1|3|C|1599
*
7OOD|1|3|G|1602
7OOD|1|3|A|1603
7OOD|1|3|A|1604
7OOD|1|3|A|1605
7OOD|1|3|A|1606
7OOD|1|3|G|1607

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2