J3_7OPE_001

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OPE_001 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.1684

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

7OPE|1|A|G|30
7OPE|1|A|C|31
*
7OPE|1|A|G|521
7OPE|1|A|U|522
7OPE|1|A|G|523
7OPE|1|A|A|524
7OPE|1|A|A|525
7OPE|1|A|A|526
7OPE|1|A|A|527
7OPE|1|A|G|528
*
7OPE|1|A|C|555
7OPE|1|A|C|556

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L20

Chain Y

50S ribosomal protein L24