J3_7OPE_008

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

7OPE|1|A|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OPE_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1372

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7OPE|1|A|C|1344
7OPE|1|A|U|1345
7OPE|1|A|A|1346
7OPE|1|A|A|1347
7OPE|1|A|G|1348
*
7OPE|1|A|C|1650
7OPE|1|A|G|1651
7OPE|1|A|C|1652
7OPE|1|A|A|1653
7OPE|1|A|A|1654
7OPE|1|A|A|1655
7OPE|1|A|C|1656
*
7OPE|1|A|G|1665
7OPE|1|A|U|1666
7OPE|1|A|A|1667
7OPE|1|A|G|1668

Current chains

Chain A

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L34