J3_7OPE_009

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OPE_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1363

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7OPE|1|A|U|1383
7OPE|1|A|C|1384
7OPE|1|A|G|1385
7OPE|1|A|G|1386
7OPE|1|A|G|1387
7OPE|1|A|A|1388
7OPE|1|A|C|1389
*
7OPE|1|A|G|1420
7OPE|1|A|A|1421
7OPE|1|A|C|1422
7OPE|1|A|A|1423
7OPE|1|A|A|1424
*
7OPE|1|A|U|1441
7OPE|1|A|A|1442

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L23