J3_7OPE_012

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7OPE|1|A|A|2547, 7OPE|1|A|U|2548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OPE_012 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0971

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7OPE|1|A|C|2546
7OPE|1|A|A|2547
7OPE|1|A|U|2548
7OPE|1|A|C|2549
*
7OPE|1|A|G|2574
7OPE|1|A|U|2575
7OPE|1|A|U|2576
*
7OPE|1|A|A|2590
7OPE|1|A|U|2591
7OPE|1|A|U|2592
7OPE|1|A|A|2593
7OPE|1|A|A|2594
7OPE|1|A|A|2595
7OPE|1|A|G|2596

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L14