J3_7OPE_017

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAG*CGCCAUAGGA*UGUAG

Length

20 nucleotides

Bulged bases

7OPE|1|A|U|365

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OPE_017 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1156

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7OPE|1|A|U|340
7OPE|1|A|G|341
7OPE|1|A|A|342
7OPE|1|A|A|343
7OPE|1|A|G|344
*
7OPE|1|A|C|360
7OPE|1|A|G|361
7OPE|1|A|C|362
7OPE|1|A|C|363
7OPE|1|A|A|364
7OPE|1|A|U|365
7OPE|1|A|A|366
7OPE|1|A|G|367
7OPE|1|A|G|368
7OPE|1|A|A|369
*
7OPE|1|A|U|381
7OPE|1|A|G|382
7OPE|1|A|U|383
7OPE|1|A|A|384
7OPE|1|A|G|385

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain Y

50S ribosomal protein L24