J3_7OPE_018
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OPE_018 not in the Motif Atlas
- Homologous match to J3_9DFE_013
- Geometric discrepancy: 0.0896
- The information below is about J3_9DFE_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.3
- Basepair signature
- cWW-tSH-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OPE|1|A|G|1470
7OPE|1|A|G|1471
7OPE|1|A|G|1472
7OPE|1|A|A|1473
7OPE|1|A|C|1474
7OPE|1|A|G|1475
*
7OPE|1|A|C|1612
7OPE|1|A|C|1613
*
7OPE|1|A|G|1616
7OPE|1|A|A|1617
7OPE|1|A|A|1618
7OPE|1|A|A|1619
7OPE|1|A|A|1620
7OPE|1|A|G|1621
7OPE|1|A|C|1622
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L2
Coloring options: