J3_7OSA_007
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 7OSA|1|18S|G|1199, 7OSA|1|18S|G|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSA_007 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0698
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7OSA|1|18S|C|1180
7OSA|1|18S|U|1181
7OSA|1|18S|U|1182
7OSA|1|18S|A|1183
7OSA|1|18S|A|1184
7OSA|1|18S|U|1185
7OSA|1|18S|U|1186
7OSA|1|18S|U|1187
*
7OSA|1|18S|G|1198
7OSA|1|18S|G|1199
7OSA|1|18S|G|1200
7OSA|1|18S|G|1201
7OSA|1|18S|A|1202
7OSA|1|18S|A|1203
7OSA|1|18S|A|1204
7OSA|1|18S|C|1205
7OSA|1|18S|U|1206
7OSA|1|18S|C|1207
7OSA|1|18S|A|1208
7OSA|1|18S|C|1209
*
7OSA|1|18S|G|1454
7OSA|1|18S|G|1455
7OSA|1|18S|C|1456
7OSA|1|18S|C|1457
7OSA|1|18S|G|1458
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain uS10
- 40S ribosomal protein S20
- Chain uS13
- 40S ribosomal protein S18-B
- Chain uS14
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain uS19
- 40S ribosomal protein S15
Coloring options: