3D structure

PDB id
7OSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAU*AGAUG*CUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OSA_027 not in the Motif Atlas
Homologous match to J3_8P9A_065
Geometric discrepancy: 0.1145
The information below is about J3_8P9A_065
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_81015.1
Basepair signature
cWW-cWW-F-cWW-F-cWW-F
Number of instances in this motif group
1

Unit IDs

7OSA|1|25S|C|3298
7OSA|1|25S|A|3299
7OSA|1|25S|U|3300
*
7OSA|1|25S|A|3314
7OSA|1|25S|G|3315
7OSA|1|25S|A|3316
7OSA|1|25S|U|3317
7OSA|1|25S|G|3318
*
7OSA|1|25S|C|3388
7OSA|1|25S|U|3389
7OSA|1|25S|G|3390

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain eL31
BJ4_G0008090.mRNA.1.CDS.1
Chain uL22
BJ4_G0005750.mRNA.1.CDS.1
Chain uL3
60S ribosomal protein L3

Coloring options:


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