J3_7OSA_042
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 7OSA|1|25S|A|3172, 7OSA|1|25S|G|3173, 7OSA|1|25S|A|3215, 7OSA|1|25S|G|3216, 7OSA|1|25S|G|3219, 7OSA|1|25S|A|3268, 7OSA|1|25S|U|3270, 7OSA|1|25S|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSA_042 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.3245
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7OSA|1|25S|U|3171
7OSA|1|25S|A|3172
7OSA|1|25S|G|3173
7OSA|1|25S|A|3174
7OSA|1|25S|U|3175
7OSA|1|25S|G|3176
*
7OSA|1|25S|C|3212
7OSA|1|25S|A|3213
7OSA|1|25S|U|3214
7OSA|1|25S|A|3215
7OSA|1|25S|G|3216
7OSA|1|25S|C|3217
7OSA|1|25S|A|3218
7OSA|1|25S|G|3219
7OSA|1|25S|G|3220
*
7OSA|1|25S|C|3265
7OSA|1|25S|G|3266
7OSA|1|25S|A|3267
7OSA|1|25S|A|3268
7OSA|1|25S|U|3269
7OSA|1|25S|U|3270
7OSA|1|25S|G|3271
7OSA|1|25S|C|3272
7OSA|1|25S|A|3273
7OSA|1|25S|A|3274
7OSA|1|25S|U|3275
7OSA|1|25S|G|3276
7OSA|1|25S|U|3277
7OSA|1|25S|C|3278
7OSA|1|25S|A|3279
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL14
- 60S ribosomal protein L14-A
- Chain eL33
- BJ4_G0025510.mRNA.1.CDS.1
- Chain eL6
- 60S ribosomal protein L6
- Chain uL13
- 60S ribosomal protein L16-A
Coloring options: