J3_7OSM_004
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7OSM|1|18S|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0798
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7OSM|1|18S|A|881
7OSM|1|18S|U|882
7OSM|1|18S|C|883
7OSM|1|18S|A|884
*
7OSM|1|18S|U|928
7OSM|1|18S|A|929
7OSM|1|18S|A|930
7OSM|1|18S|C|931
7OSM|1|18S|U|932
7OSM|1|18S|A|933
7OSM|1|18S|C|934
7OSM|1|18S|U|935
7OSM|1|18S|G|936
*
7OSM|1|18S|C|943
7OSM|1|18S|A|944
7OSM|1|18S|U|945
7OSM|1|18S|U|946
7OSM|1|18S|U|947
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain eL43
- 60S ribosomal protein L43-A
- Chain eS1
- 40S ribosomal protein S1
- Chain eS26
- 40S ribosomal protein S26
- Chain uS11
- 40S ribosomal protein S14-A
- Chain uS15
- 40S ribosomal protein S13
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