J3_7OSM_008

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUUAAUUU*GGGGAAACUCAC*GGCCGC

Length

27 nucleotides

Bulged bases

7OSM|1|18S|G|1199, 7OSM|1|18S|G|1201, 7OSM|1|18S|A|1203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSM_008 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.5448

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7OSM|1|18S|G|1179
7OSM|1|18S|C|1180
7OSM|1|18S|U|1181
7OSM|1|18S|U|1182
7OSM|1|18S|A|1183
7OSM|1|18S|A|1184
7OSM|1|18S|U|1185
7OSM|1|18S|U|1186
7OSM|1|18S|U|1187
*
7OSM|1|18S|G|1198
7OSM|1|18S|G|1199
7OSM|1|18S|G|1200
7OSM|1|18S|G|1201
7OSM|1|18S|A|1202
7OSM|1|18S|A|1203
7OSM|1|18S|A|1204
7OSM|1|18S|C|1205
7OSM|1|18S|U|1206
7OSM|1|18S|C|1207
7OSM|1|18S|A|1208
7OSM|1|18S|C|1209
*
7OSM|1|18S|G|1454
7OSM|1|18S|G|1455
7OSM|1|18S|C|1456
7OSM|1|18S|C|1457
7OSM|1|18S|G|1458
7OSM|1|18S|C|1459

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain ASIT

Transfer RNA; tRNA

Chain uS10

40S ribosomal protein S20

Chain uS13

40S ribosomal protein S18-B

Chain uS14

HLJ1_G0030400.mRNA.1.CDS.1

Chain uS19

40S ribosomal protein S15