J3_7OSM_035

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAGACACAAUAAGGAUUGA*UCUUGAUUUUGUGGGUG*UUAGACG

Length

44 nucleotides

Bulged bases

7OSM|1|18S|G|1228, 7OSM|1|18S|G|1445, 7OSM|1|18S|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OSM|1|18S|C|1215
7OSM|1|18S|C|1216
7OSM|1|18S|A|1217
7OSM|1|18S|G|1218
7OSM|1|18S|A|1219
7OSM|1|18S|C|1220
7OSM|1|18S|A|1221
7OSM|1|18S|C|1222
7OSM|1|18S|A|1223
7OSM|1|18S|A|1224
7OSM|1|18S|U|1225
7OSM|1|18S|A|1226
7OSM|1|18S|A|1227
7OSM|1|18S|G|1228
7OSM|1|18S|G|1229
7OSM|1|18S|A|1230
7OSM|1|18S|U|1231
7OSM|1|18S|U|1232
7OSM|1|18S|G|1233
7OSM|1|18S|A|1234
*
7OSM|1|18S|U|1251
7OSM|1|18S|C|1252
7OSM|1|18S|U|1253
7OSM|1|18S|U|1254
7OSM|1|18S|G|1255
7OSM|1|18S|A|1256
7OSM|1|18S|U|1257
7OSM|1|18S|U|1258
7OSM|1|18S|U|1259
7OSM|1|18S|U|1260
7OSM|1|18S|G|1261
7OSM|1|18S|U|1262
7OSM|1|18S|G|1263
7OSM|1|18S|G|1264
7OSM|1|18S|G|1265
7OSM|1|18S|U|1266
7OSM|1|18S|G|1267
*
7OSM|1|18S|U|1442
7OSM|1|18S|U|1443
7OSM|1|18S|A|1444
7OSM|1|18S|G|1445
7OSM|1|18S|A|1446
7OSM|1|18S|C|1447
7OSM|1|18S|G|1448

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eEF2

Elongation factor 2

Chain eS10

40S ribosomal protein S10-A

Chain eS31

Ubiquitin-40S ribosomal protein S31

Chain uS14

HLJ1_G0030400.mRNA.1.CDS.1