J3_7OSM_040

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAUGUU*ACGUCAUAGAG*CGUGUGG

Length

25 nucleotides

Bulged bases

7OSM|1|25S|U|190, 7OSM|1|25S|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OSM|1|25S|C|185
7OSM|1|25S|U|186
7OSM|1|25S|A|187
7OSM|1|25S|U|188
7OSM|1|25S|G|189
7OSM|1|25S|U|190
7OSM|1|25S|U|191
*
7OSM|1|25S|A|204
7OSM|1|25S|C|205
7OSM|1|25S|G|206
7OSM|1|25S|U|207
7OSM|1|25S|C|208
7OSM|1|25S|A|209
7OSM|1|25S|U|210
7OSM|1|25S|A|211
7OSM|1|25S|G|212
7OSM|1|25S|A|213
7OSM|1|25S|G|214
*
7OSM|1|25S|C|226
7OSM|1|25S|G|227
7OSM|1|25S|U|228
7OSM|1|25S|G|229
7OSM|1|25S|U|230
7OSM|1|25S|G|231
7OSM|1|25S|G|232

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 58S

5.8S ribosomal RNA; 5.8S rRNA

Chain uL24

60S ribosomal protein L26-A

Chain uL4

BJ4_G0008850.mRNA.1.CDS.1