J3_7OSM_046
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAGCUG*CACGUUCUAGCAUUCAAG*UGAUC
- Length
- 29 nucleotides
- Bulged bases
- 7OSM|1|25S|G|2549, 7OSM|1|25S|U|2550, 7OSM|1|25S|U|2551, 7OSM|1|25S|C|2552, 7OSM|1|25S|U|2553, 7OSM|1|25S|A|2554, 7OSM|1|25S|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OSM|1|25S|G|2528
7OSM|1|25S|A|2529
7OSM|1|25S|G|2530
7OSM|1|25S|C|2531
7OSM|1|25S|U|2532
7OSM|1|25S|G|2533
*
7OSM|1|25S|C|2546
7OSM|1|25S|A|2547
7OSM|1|25S|C|2548
7OSM|1|25S|G|2549
7OSM|1|25S|U|2550
7OSM|1|25S|U|2551
7OSM|1|25S|C|2552
7OSM|1|25S|U|2553
7OSM|1|25S|A|2554
7OSM|1|25S|G|2555
7OSM|1|25S|C|2556
7OSM|1|25S|A|2557
7OSM|1|25S|U|2558
7OSM|1|25S|U|2559
7OSM|1|25S|C|2560
7OSM|1|25S|A|2561
7OSM|1|25S|A|2562
7OSM|1|25S|G|2563
*
7OSM|1|25S|U|2578
7OSM|1|25S|G|2579
7OSM|1|25S|A|2580
7OSM|1|25S|U|2581
7OSM|1|25S|C|2582
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL27
- 60S ribosomal protein L27
- Chain eL30
- BJ4_G0020000.mRNA.1.CDS.1
- Chain eL34
- 60S ribosomal protein L34-A
- Chain eL43
- 60S ribosomal protein L43-A
- Chain eL8
- 60S ribosomal protein L8-A
- Chain eS1
- 40S ribosomal protein S1
- Chain uL2
- 60S ribosomal protein L2-B
- Chain uL23
- 60S ribosomal protein L25
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