J3_7OSM_048

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUU

Length

36 nucleotides

Bulged bases

7OSM|1|25S|A|3172, 7OSM|1|25S|G|3173, 7OSM|1|25S|A|3215, 7OSM|1|25S|C|3217, 7OSM|1|25S|A|3218, 7OSM|1|25S|A|3268, 7OSM|1|25S|U|3269, 7OSM|1|25S|U|3270, 7OSM|1|25S|G|3271, 7OSM|1|25S|C|3272, 7OSM|1|25S|C|3278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OSM|1|25S|A|3168
7OSM|1|25S|U|3169
7OSM|1|25S|A|3170
7OSM|1|25S|U|3171
7OSM|1|25S|A|3172
7OSM|1|25S|G|3173
7OSM|1|25S|A|3174
7OSM|1|25S|U|3175
7OSM|1|25S|G|3176
*
7OSM|1|25S|C|3212
7OSM|1|25S|A|3213
7OSM|1|25S|U|3214
7OSM|1|25S|A|3215
7OSM|1|25S|G|3216
7OSM|1|25S|C|3217
7OSM|1|25S|A|3218
7OSM|1|25S|G|3219
7OSM|1|25S|G|3220
*
7OSM|1|25S|C|3265
7OSM|1|25S|G|3266
7OSM|1|25S|A|3267
7OSM|1|25S|A|3268
7OSM|1|25S|U|3269
7OSM|1|25S|U|3270
7OSM|1|25S|G|3271
7OSM|1|25S|C|3272
7OSM|1|25S|A|3273
7OSM|1|25S|A|3274
7OSM|1|25S|U|3275
7OSM|1|25S|G|3276
7OSM|1|25S|U|3277
7OSM|1|25S|C|3278
7OSM|1|25S|A|3279
7OSM|1|25S|U|3280
7OSM|1|25S|U|3281
7OSM|1|25S|U|3282

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL14

60S ribosomal protein L14-A

Chain eL33

BJ4_G0025510.mRNA.1.CDS.1

Chain eL6

60S ribosomal protein L6

Chain uL13

60S ribosomal protein L16-A