J3_7OTC_003

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7OTC|1|A|U|686, 7OTC|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OTC_003 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.3455

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7OTC|1|A|U|683
7OTC|1|A|G|684
7OTC|1|A|A|685
7OTC|1|A|U|686
7OTC|1|A|C|687
7OTC|1|A|U|688
7OTC|1|A|A|689
*
7OTC|1|A|U|773
7OTC|1|A|G|774
7OTC|1|A|G|775
*
7OTC|1|A|C|791
7OTC|1|A|A|792
7OTC|1|A|A|793
7OTC|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2