J3_7OTC_005

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OTC_005 not in the Motif Atlas

Homologous match to J3_8VTW_003

Geometric discrepancy: 0.2697

The information below is about J3_8VTW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OTC|1|A|G|1055
7OTC|1|A|G|1056
7OTC|1|A|A|1057
*
7OTC|1|A|U|1081
7OTC|1|A|U|1082
7OTC|1|A|U|1083
7OTC|1|A|A|1084
7OTC|1|A|A|1085
7OTC|1|A|A|1086
7OTC|1|A|G|1087
*
7OTC|1|A|C|1102
7OTC|1|A|A|1103
7OTC|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36