J3_8VTW_003

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTW_003 not in the Motif Atlas

Geometric match to J3_6PRV_001

Geometric discrepancy: 0.1901

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8VTW|1|1A|G|1055
8VTW|1|1A|G|1056
8VTW|1|1A|A|1057
*
8VTW|1|1A|U|1081
8VTW|1|1A|U|1082
8VTW|1|1A|U|1083
8VTW|1|1A|A|1084
8VTW|1|1A|A|1085
8VTW|1|1A|A|1086
8VTW|1|1A|G|1087
*
8VTW|1|1A|C|1102
8VTW|1|1A|A|1103
8VTW|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36