J3_7OTC_007

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7OTC|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OTC_007 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.1491

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7OTC|1|A|C|1306
7OTC|1|A|A|1307
7OTC|1|A|A|1308
7OTC|1|A|G|1309
*
7OTC|1|A|C|1605
7OTC|1|A|C|1606
7OTC|1|A|C|1607
7OTC|1|A|A|1608
7OTC|1|A|A|1609
7OTC|1|A|A|1610
7OTC|1|A|C|1611
*
7OTC|1|A|G|1620
7OTC|1|A|U|1621
7OTC|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34