J3_7OTC_009

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OTC_009 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.1195

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7OTC|1|A|C|2091
7OTC|1|A|U|2092
7OTC|1|A|G|2093
*
7OTC|1|A|C|2196
7OTC|1|A|U|2197
7OTC|1|A|A|2198
7OTC|1|A|A|2199
7OTC|1|A|C|2200
*
7OTC|1|A|G|2223
7OTC|1|A|G|2224
7OTC|1|A|A|2225
7OTC|1|A|C|2226
7OTC|1|A|A|2227
7OTC|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28