J3_7OYD_001

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

7OYD|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|C|112
7OYD|1|5|A|113
7OYD|1|5|G|114
7OYD|1|5|C|115
7OYD|1|5|G|116
*
7OYD|1|5|C|155
7OYD|1|5|G|156
7OYD|1|5|U|157
7OYD|1|5|A|158
7OYD|1|5|C|159
7OYD|1|5|G|160
*
7OYD|1|5|C|275
7OYD|1|5|C|276
7OYD|1|5|G|277
7OYD|1|5|G|278

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

RPL7A

Chain L

L13

Chain N

Ribosomal protein L15

Chain h

uL29

Chain i

60S ribosomal protein L36