J3_7OYD_003
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUC*GCCGG*CCACGCGCG
- Length
- 17 nucleotides
- Bulged bases
- 7OYD|1|5|C|1241, 7OYD|1|5|G|1275, 7OYD|1|5|C|1276
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|5|C|986
7OYD|1|5|U|987
7OYD|1|5|C|988
*
7OYD|1|5|G|1074
7OYD|1|5|C|1075
7OYD|1|5|C|1076
7OYD|1|5|G|1077
7OYD|1|5|G|1078
*
7OYD|1|5|C|1240
7OYD|1|5|C|1241
7OYD|1|5|A|1242
7OYD|1|5|C|1243
7OYD|1|5|G|1248
7OYD|1|5|C|1249
7OYD|1|5|G|1275
7OYD|1|5|C|1276
7OYD|1|5|G|1277
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain F
- uL30
- Chain b
- 60S ribosomal protein L29
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