J3_7OYD_007

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUG*CGCUAAGG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|G|1973
7OYD|1|5|A|1974
7OYD|1|5|U|1975
7OYD|1|5|G|1976
*
7OYD|1|5|C|1998
7OYD|1|5|G|1999
7OYD|1|5|C|2000
7OYD|1|5|U|2001
7OYD|1|5|A|2002
7OYD|1|5|A|2003
7OYD|1|5|G|2004
7OYD|1|5|G|2005
*
7OYD|1|5|C|2020
7OYD|1|5|A|2021
7OYD|1|5|C|2022

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

RPLP0