J3_7OYD_011

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

7OYD|1|5|U|2767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|A|2555
7OYD|1|5|G|2556
7OYD|1|5|A|2557
7OYD|1|5|U|2558
7OYD|1|5|G|2559
*
7OYD|1|5|C|2576
7OYD|1|5|A|2577
7OYD|1|5|G|2578
7OYD|1|5|U|2579
*
7OYD|1|5|A|2761
7OYD|1|5|G|2762
7OYD|1|5|G|2763
7OYD|1|5|G|2764
7OYD|1|5|U|2765
7OYD|1|5|G|2766
7OYD|1|5|U|2767
7OYD|1|5|A|2768
7OYD|1|5|A|2769
7OYD|1|5|A|2770
7OYD|1|5|U|2771

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27