J3_7OYD_013

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|C|3941
7OYD|1|5|G|3942
7OYD|1|5|G|3943
*
7OYD|1|5|C|4078
7OYD|1|5|U|4079
7OYD|1|5|G|4080
7OYD|1|5|A|4081
7OYD|1|5|C|4082
*
7OYD|1|5|G|4172
7OYD|1|5|G|4173
7OYD|1|5|A|4174
7OYD|1|5|C|4175
7OYD|1|5|A|4176
7OYD|1|5|G|4177

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

RPL7A

Chain N

Ribosomal protein L15