J3_7OYD_015
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUC*GCCU(5MC)ACGAUCCU*A(OMG)(MHG)UGUC
- Length
- 23 nucleotides
- Bulged bases
- 7OYD|1|5|U|4378
- QA status
- Modified nucleotides: 5MC, OMG, MHG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|5|G|4232
7OYD|1|5|U|4233
7OYD|1|5|C|4234
*
7OYD|1|5|G|4335
7OYD|1|5|C|4336
7OYD|1|5|C|4337
7OYD|1|5|U|4338
7OYD|1|5|5MC|4339
7OYD|1|5|A|4340
7OYD|1|5|C|4341
7OYD|1|5|G|4342
7OYD|1|5|A|4343
7OYD|1|5|U|4344
7OYD|1|5|C|4345
7OYD|1|5|C|4346
7OYD|1|5|U|4347
*
7OYD|1|5|A|4373
7OYD|1|5|OMG|4374
7OYD|1|5|MHG|4375
7OYD|1|5|U|4376
7OYD|1|5|G|4377
7OYD|1|5|U|4378
7OYD|1|5|C|4379
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Q
- RPL18
- Chain T
- eL21
- Chain a
- uL15
- Chain o
- RPL36A
- Chain t
- Eukaryotic translation initiation factor 5A-1
Coloring options: