J3_7OYD_018

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

7OYD|1|5|U|4993

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|C|4974
7OYD|1|5|A|4975
7OYD|1|5|U|4976
*
7OYD|1|5|G|4990
7OYD|1|5|C|4991
7OYD|1|5|U|4992
7OYD|1|5|U|4993
7OYD|1|5|C|4994
7OYD|1|5|U|4995
*
7OYD|1|5|A|5064
7OYD|1|5|A|5065
7OYD|1|5|G|5066
7OYD|1|5|G|5067

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

60S ribosomal protein L17

Chain d

eL31