J3_7OYD_022
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_022 not in the Motif Atlas
- Homologous match to J3_8C3A_035
- Geometric discrepancy: 0.2502
- The information below is about J3_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_00811.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|9|A|816
7OYD|1|9|G|817
7OYD|1|9|A|818
7OYD|1|9|G|819
*
7OYD|1|9|C|829
7OYD|1|9|A|830
7OYD|1|9|G|831
*
7OYD|1|9|C|843
7OYD|1|9|U|844
7OYD|1|9|G|845
7OYD|1|9|G|846
7OYD|1|9|A|847
7OYD|1|9|U|848
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain YY
- 40S ribosomal protein S24
Coloring options: