J3_7OYD_031
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 7OYD|1|9|U|1477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|9|C|1391
7OYD|1|9|U|1392
7OYD|1|9|G|1393
7OYD|1|9|G|1394
7OYD|1|9|C|1395
*
7OYD|1|9|G|1450
7OYD|1|9|G|1451
7OYD|1|9|A|1452
7OYD|1|9|C|1453
7OYD|1|9|A|1454
7OYD|1|9|A|1455
7OYD|1|9|G|1456
*
7OYD|1|9|C|1470
7OYD|1|9|C|1471
7OYD|1|9|C|1472
7OYD|1|9|G|1473
7OYD|1|9|A|1474
7OYD|1|9|G|1475
7OYD|1|9|A|1476
7OYD|1|9|U|1477
7OYD|1|9|U|1478
7OYD|1|9|G|1479
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain Cc
- Ribosomal protein S28
- Chain DD
- Ribosomal protein S3
- Chain Dd
- uS14
- Chain FF
- Ribosomal protein S5
- Chain Gg
- RACK1
- Chain QQ
- Ribosomal protein S16
- Chain RR
- 40S ribosomal protein eS17
- Chain UU
- 40S ribosomal protein uS10
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