J3_7OYD_036

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

7OYD|1|5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|C|451
7OYD|1|5|A|452
7OYD|1|5|G|453
7OYD|1|5|U|454
7OYD|1|5|C|455
*
7OYD|1|5|G|701
7OYD|1|5|U|702
7OYD|1|5|G|703
7OYD|1|5|C|704
7OYD|1|5|G|705
*
7OYD|1|5|C|1296
7OYD|1|5|G|1297
7OYD|1|5|A|1298
7OYD|1|5|U|1299
7OYD|1|5|G|1300

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

eL32

Chain f

eL33

Chain r

eL28