J3_7OYD_038
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAA(B8W)*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 7OYD|1|5|C|4120, 7OYD|1|5|U|4121, 7OYD|1|5|U|4122, 7OYD|1|5|C|4123, 7OYD|1|5|U|4124, 7OYD|1|5|G|4125
- QA status
- Modified nucleotides: B8W
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_038 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2706
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7OYD|1|5|G|4095
7OYD|1|5|G|4096
7OYD|1|5|G|4097
7OYD|1|5|G|4098
*
7OYD|1|5|C|4118
7OYD|1|5|G|4119
7OYD|1|5|C|4120
7OYD|1|5|U|4121
7OYD|1|5|U|4122
7OYD|1|5|C|4123
7OYD|1|5|U|4124
7OYD|1|5|G|4125
7OYD|1|5|G|4126
7OYD|1|5|C|4127
7OYD|1|5|G|4128
7OYD|1|5|C|4129
7OYD|1|5|C|4130
7OYD|1|5|A|4131
7OYD|1|5|A|4132
7OYD|1|5|B8W|4133
*
7OYD|1|5|C|4159
7OYD|1|5|G|4160
7OYD|1|5|A|4161
7OYD|1|5|C|4162
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain BB
- 40S ribosomal protein S3a
- Chain G
- RPL7A
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- 60S ribosomal protein L34
- Chain p
- eL43
Coloring options: