J3_7OYD_040
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 7OYD|1|5|U|4886, 7OYD|1|5|A|4942, 7OYD|1|5|C|4944, 7OYD|1|5|A|4947, 7OYD|1|5|C|4948, 7OYD|1|5|U|4954
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|5|C|4753
7OYD|1|5|G|4754
7OYD|1|5|G|4755
7OYD|1|5|U|4756
7OYD|1|5|U|4757
7OYD|1|5|G|4758
*
7OYD|1|5|C|4883
7OYD|1|5|C|4884
7OYD|1|5|U|4885
7OYD|1|5|U|4886
7OYD|1|5|C|4887
*
7OYD|1|5|G|4940
7OYD|1|5|C|4941
7OYD|1|5|A|4942
7OYD|1|5|C|4943
7OYD|1|5|C|4944
7OYD|1|5|G|4945
7OYD|1|5|C|4946
7OYD|1|5|A|4947
7OYD|1|5|C|4948
7OYD|1|5|G|4949
7OYD|1|5|U|4950
7OYD|1|5|U|4951
7OYD|1|5|C|4952
7OYD|1|5|G|4953
7OYD|1|5|U|4954
7OYD|1|5|G|4955
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain M
- 60S ribosomal protein L14
- Chain O
- RPL13A
- Chain f
- eL33
Coloring options: