J3_7OYD_043

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

7OYD|1|9|G|1274, 7OYD|1|9|G|1507, 7OYD|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|9|G|1270
7OYD|1|9|C|1271
7OYD|1|9|C|1272
7OYD|1|9|C|1273
7OYD|1|9|G|1274
7OYD|1|9|G|1275
7OYD|1|9|A|1276
7OYD|1|9|C|1277
*
7OYD|1|9|G|1320
7OYD|1|9|G|1321
7OYD|1|9|G|1322
7OYD|1|9|U|1323
7OYD|1|9|G|1324
*
7OYD|1|9|U|1504
7OYD|1|9|U|1505
7OYD|1|9|A|1506
7OYD|1|9|G|1507
7OYD|1|9|A|1508
7OYD|1|9|U|1509
7OYD|1|9|G|1510
7OYD|1|9|U|1511
7OYD|1|9|C|1512

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Dd

uS14

Chain KK

eS10

Chain v

EEF2