J3_7OYD_046
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- U(OMG)G*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 7OYD|1|9|G|921
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_046 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1237
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7OYD|1|9|U|682
7OYD|1|9|OMG|683
7OYD|1|9|G|684
*
7OYD|1|9|U|918
7OYD|1|9|A|919
7OYD|1|9|A|920
7OYD|1|9|G|921
7OYD|1|9|A|922
7OYD|1|9|G|923
*
7OYD|1|9|C|1019
7OYD|1|9|A|1020
7OYD|1|9|U|1021
7OYD|1|9|U|1022
7OYD|1|9|A|1023
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain Bb
- 40S ribosomal protein S27
- Chain HH
- 40S ribosomal protein S7
- Chain LL
- 40S ribosomal protein S11
- Chain NN
- uS15
- Chain WW
- Ribosomal protein S15a
- Chain XX
- RPS23
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