J3_7P48_007

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

7P48|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P48_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1099

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7P48|1|A|C|1342
7P48|1|A|U|1343
7P48|1|A|A|1344
7P48|1|A|A|1345
7P48|1|A|G|1346
*
7P48|1|A|C|1649
7P48|1|A|G|1650
7P48|1|A|C|1651
7P48|1|A|A|1652
7P48|1|A|A|1653
7P48|1|A|A|1654
7P48|1|A|C|1655
*
7P48|1|A|G|1664
7P48|1|A|U|1665
7P48|1|A|A|1666
7P48|1|A|G|1667

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34