J3_7P48_010

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7P48|1|A|A|2545, 7P48|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P48_010 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1007

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7P48|1|A|C|2544
7P48|1|A|A|2545
7P48|1|A|U|2546
7P48|1|A|C|2547
*
7P48|1|A|G|2572
7P48|1|A|U|2573
7P48|1|A|U|2574
*
7P48|1|A|A|2588
7P48|1|A|U|2589
7P48|1|A|U|2590
7P48|1|A|A|2591
7P48|1|A|A|2592
7P48|1|A|A|2593
7P48|1|A|G|2594

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L14