J3_7P48_011

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P48_011 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.3432

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7P48|1|A|C|2816
7P48|1|A|A|2817
*
7P48|1|A|U|2826
7P48|1|A|A|2827
7P48|1|A|U|2828
7P48|1|A|A|2829
7P48|1|A|A|2830
7P48|1|A|G|2831
*
7P48|1|A|C|2909
7P48|1|A|G|2910
7P48|1|A|A|2911
7P48|1|A|A|2912
7P48|1|A|G|2913

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3