J3_7P48_027
3D structure
- PDB id
- 7P48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus ribosome in complex with Sal(B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAU*AAUCAAAGAA*UGUAG
- Length
- 20 nucleotides
- Bulged bases
- 7P48|1|A|A|364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7P48_027 not in the Motif Atlas
- Homologous match to J3_4WF9_015
- Geometric discrepancy: 0.1188
- The information below is about J3_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7P48|1|A|C|340
7P48|1|A|G|341
7P48|1|A|A|342
7P48|1|A|A|343
7P48|1|A|U|344
*
7P48|1|A|A|359
7P48|1|A|A|360
7P48|1|A|U|361
7P48|1|A|C|362
7P48|1|A|A|363
7P48|1|A|A|364
7P48|1|A|A|365
7P48|1|A|G|366
7P48|1|A|A|367
7P48|1|A|A|368
*
7P48|1|A|U|380
7P48|1|A|G|381
7P48|1|A|U|382
7P48|1|A|A|383
7P48|1|A|G|384
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L24
Coloring options: