J3_7P7Q_028
3D structure
- PDB id
- 7P7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAUAGAUCC
- Length
- 28 nucleotides
- Bulged bases
- 7P7Q|1|A|U|542, 7P7Q|1|A|U|546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7P7Q_028 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1213
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
7P7Q|1|A|G|30
7P7Q|1|A|C|31
*
7P7Q|1|A|G|513
7P7Q|1|A|U|514
7P7Q|1|A|G|515
7P7Q|1|A|A|516
7P7Q|1|A|A|517
7P7Q|1|A|A|518
7P7Q|1|A|A|519
7P7Q|1|A|G|520
7P7Q|1|A|C|521
7P7Q|1|A|A|522
7P7Q|1|A|C|523
*
7P7Q|1|A|G|534
7P7Q|1|A|A|535
7P7Q|1|A|G|536
7P7Q|1|A|U|537
7P7Q|1|A|G|538
7P7Q|1|A|A|539
7P7Q|1|A|A|540
7P7Q|1|A|A|541
7P7Q|1|A|U|542
7P7Q|1|A|A|543
7P7Q|1|A|G|544
7P7Q|1|A|A|545
7P7Q|1|A|U|546
7P7Q|1|A|C|547
7P7Q|1|A|C|548
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain T
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L24
Coloring options: