J3_7P7Q_035
3D structure
- PDB id
- 7P7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 7P7Q|1|a|C|50, 7P7Q|1|a|A|53
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7P7Q_035 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0738
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.2
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
7P7Q|1|a|G|48
7P7Q|1|a|C|49
7P7Q|1|a|C|50
7P7Q|1|a|U|51
7P7Q|1|a|A|52
7P7Q|1|a|A|53
7P7Q|1|a|U|54
*
7P7Q|1|a|A|385
7P7Q|1|a|G|386
7P7Q|1|a|G|387
7P7Q|1|a|G|388
7P7Q|1|a|A|389
7P7Q|1|a|A|390
7P7Q|1|a|U|391
7P7Q|1|a|C|392
7P7Q|1|a|U|393
*
7P7Q|1|a|A|419
7P7Q|1|a|G|420
7P7Q|1|a|C|421
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S16
Coloring options: