J3_7P7U_004

3D structure

PDB id

7P7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome with P-tRNA, state IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7P7U|1|A|U|725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P7U_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.083

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7P7U|1|A|U|722
7P7U|1|A|G|723
7P7U|1|A|A|724
7P7U|1|A|U|725
7P7U|1|A|C|726
7P7U|1|A|U|727
7P7U|1|A|A|728
*
7P7U|1|A|U|812
7P7U|1|A|A|813
7P7U|1|A|G|814
*
7P7U|1|A|C|830
7P7U|1|A|G|831
7P7U|1|A|A|832
7P7U|1|A|A|833

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain G

50S ribosomal protein L2