J3_7P7U_010

3D structure

PDB id

7P7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome with P-tRNA, state IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P7U_010 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.1461

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7P7U|1|A|U|2104
7P7U|1|A|U|2105
7P7U|1|A|G|2106
*
7P7U|1|A|C|2209
7P7U|1|A|U|2210
7P7U|1|A|A|2211
7P7U|1|A|A|2212
7P7U|1|A|C|2213
7P7U|1|A|C|2214
*
7P7U|1|A|G|2235
7P7U|1|A|A|2236
7P7U|1|A|G|2237
7P7U|1|A|A|2238
7P7U|1|A|C|2239
7P7U|1|A|A|2240
7P7U|1|A|G|2241

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain Z

50S ribosomal protein L28